RDML.GetFData | R Documentation |
RDML
objectGets fluorescence data vectors from RDML
object for specified method
of experiment.
request |
Output from AsTable method(RDML.AsTable) |
dp.type |
Type of fluorescence data (i.e. 'adp' for qPCR or 'mdp' for melting) |
long.table |
Output table is ready for ggplot (See RDML.AsTable for example) |
matrix
which contains selected fluorescence data and
additional information fromm request if long.table = TRUE
.
Konstantin A. Blagodatskikh <k.blag@yandex.ru>, Stefan Roediger <stefan.roediger@b-tu.de>, Michal Burdukiewicz <michalburdukiewicz@gmail.com>
## Not run: ## internal dataset BioRad_qPCR_melt.rdml (in 'data' directory) ## generated by Bio-Rad CFX96. Contains qPCR and melting data. ## Import without splitting by targets/types and with ## custom name pattern. PATH <- path.package("RDML") filename <- paste(PATH, "/extdata/", "BioRad_qPCR_melt.rdml", sep ="") cfx96 <- RDML$new(filename) ## Select melting fluorescence data with sample.type 'unkn'. library(dplyr) tab <- cfx96$AsTable() fdata <- cfx96$GetFData(filter(tab, sample.type == "unkn"), dp.type = "adp") ## Show names for obtained fdata colnames(fdata) ## End(Not run)
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