gseaplot: Plot GSEA graph
In kaigu1990/siGSEA: A simple GSEA tool for expression data

This GSEA graph is nearly the same with GSEA official plot with very minimal change to the source code.

1	gseaplot(expr, list, gset = NULL, nompval = 0.05, fdr = 0.25)

`expr`	Matrix or dataframe of expression data (rows are genes and columns are samples)
`list`	Result of simple_gsea function
`gset`	You can choose one gene set as input or Null which means those satisfied gene sets will be plot
`nompval`	Significance threshold for nominal p-vals for gene sets (default: 0.05)
`fdr`	Significance threshold for FDR q-vals for gene sets (default: 0.25)

GSEA graph

1 2	gseaplot <- function(expr = data, list = res, gset = NULL, nompval = 0.05, fdr = 0.25) gseaplot <- function(expr = data, list = res, gset = "chr10q11")