Description Usage Arguments Value Examples
This GSEA graph is nearly the same with GSEA official plot with very minimal change to the source code.
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expr |
Matrix or dataframe of expression data (rows are genes and columns are samples) |
list |
Result of simple_gsea function |
gset |
You can choose one gene set as input or Null which means those satisfied gene sets will be plot |
nompval |
Significance threshold for nominal p-vals for gene sets (default: 0.05) |
fdr |
Significance threshold for FDR q-vals for gene sets (default: 0.25) |
GSEA graph
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