allEdges: Protein Peptide Mappings in Character Vector

In kairenchen721/interpretproteinidentification: Visually Interprets Protein Identification

Description

A set of peptide obtained mass spectrometry, mapped to protein from uniprot should be even

Usage

allEdges

Format

A character vector:

a peptide sequence, then a protein accession and so on

Source

https://github.com/OpenMS/OpenMS/blob/develop/share/OpenMS/examples/BSA/BSA1_OMSSA.idXML

References

Röst, H. L., Sachsenberg, T., Aiche, S., Bielow, C., Weisser, H., Aicheler, F., Andreotti, S., Ehrlich, H. C., Gutenbrunner, P., Kenar, E., Liang, X., Nahnsen, S., Nilse, L., Pfeuffer, J., Rosenberger, G., Rurik, M., Schmitt, U., Veit, J., Walzer, M., Wojnar, D., … Kohlbacher, O. (2016). OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nature methods, 13(9), 741–748. https://doi.org/10.1038/nmeth.3959

Examples

## Not run: 
 allEdges

## End(Not run)

kairenchen721/interpretproteinidentification documentation built on Dec. 21, 2021, 5:15 a.m.