extendSingleTranscript: Extend a single transcript in one direction using exons from...

Description Usage Arguments Value

Description

Extend a single transcript in one direction using exons from the reference transcript

Usage

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extendSingleTranscript(tx_id, longest_tx_id, direction, exons,
  max_exon_extension = 1e+05)

Arguments

tx_id

ID of the truncated transcript.

longest_tx_id

ID of the reference transcript.

direction

Direction of extension (upstream or downstream)

exons

GRangesList of transcripts.

max_exon_extension

If truncated and reference transcripts exon bpundaries do not match, then this specifies the maximum number of allowed nucleotides that the truncated transcript can be longer than the reference transcript for the extension to proceed.

Value

Extended version of the truncated transcript (GRanges object)


kauralasoo/reviseAnnotations documentation built on May 20, 2019, 7:41 a.m.