extendTranscriptsPerGene: Extend truncated transcripts to the longest annotated...
In kauralasoo/reviseAnnotations: What the package does (short line)

Description Usage Arguments Value Author(s)

Identify transcripts that are flagged as start or end not found and extend them by adding missing exons from the longest transcript of the gene. Importantly, if the last exon at the truncated end is not present in the longest transcript, then the truncated transcript will not be extended, because there is no information supporting that exon junction.

1	extendTranscriptsPerGene(metadata, exons, cdss)

`metadata`	data frame of transcript metadata (required columns: ensembl_transcript_id, longest_start, longest_end, cds_start_NF, cds_end_NF, cds_start_end_NF).
`exons`	named list of GRanges objects containing the exon coordinates for each transcript.
`cdss`	named list of GRanges objects containing the CDS coordinates for each transcript.