extractGeneData: Extract gene-specifc data from annotations data frame and...
In kauralasoo/reviseAnnotations: What the package does (short line)
Description
Usage
Arguments
Value
Author(s)
Description
Extract gene-specifc data from annotations data frame and exons/cdss lists.
Usage
1
extractGeneData(gene_id, annotations_df, exons, cdss, transcript_ids = NULL)
Arguments
gene_id
Ensembl id of the gene.
annotations_df
data frame containing transcript metadata.
exons
named list of GRanges objects containing the exon coordinates for each transcript.
cdss
named list of GRanges objects containing the CDS coordinates for each transcript.
Value
List of 3 objects: filtered gene metadata, filtered exon coordinates (gene trancripts only),
filtered CDS coordinates (gene transcripts only)
Author(s)
Kaur Alasoo
kauralasoo/reviseAnnotations documentation built on May 20, 2019, 7:41 a.m.
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Description Usage Arguments Value Author(s)
Description
Extract gene-specifc data from annotations data frame and exons/cdss lists.
Usage
1 | extractGeneData(gene_id, annotations_df, exons, cdss, transcript_ids = NULL)
|
Arguments
gene_id |
Ensembl id of the gene. |
annotations_df |
data frame containing transcript metadata. |
exons |
named list of GRanges objects containing the exon coordinates for each transcript. |
cdss |
named list of GRanges objects containing the CDS coordinates for each transcript. |
Value
List of 3 objects: filtered gene metadata, filtered exon coordinates (gene trancripts only), filtered CDS coordinates (gene transcripts only)
Author(s)
Kaur Alasoo
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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