Man pages for kbroman/ricalc
Calculations for Recombinant Inbred Lines
| coinc.gam | Three-point coincidence under the gamma renewal model |
| convert2gen | Convert simulated pedigree data to genotypes at markers |
| convert.full.tm | Convert sparse version of transition matrix to full form |
| count.absorb | Count absorbing states |
| fulltm | Symbolic generation-to-generation transition matrices |
| genAILped | Generate a pedigree matrix for AIL |
| get.full.tm | Calculate the transition matrix for the formation of RILs |
| get.full.tm.symbolic | Calculate symbolic form of transition matrix for the... |
| get.ril.coinc | Calculate 3-point coincidence on an RIL chromosome |
| get.ril.prob | Calculate the haplotype probabilities for an RIL chromosome |
| get.start | Determine the initial state in the generation of RILs |
| imf.gam | Inverse map function for gamma renewal model |
| lookup | Look-up tables for multi-locus parental types |
| mf.gam | Map function for gamma renewal model |
| mouseL | Estimated genetic lengths of mouse chromosomes |
| mtm | Symbolic transition matrices for meiosis |
| ricalc-internal | Internal ricalc functions |
| ricalc-package | Overview of R/ricalc package |
| ricalcversion | Installed version of R/ricalc |
| sim.ped | Simulate a general pedigree |
| sim.ri | Simulate a recombinant inbred line |
| threept | Three-point probabilities for four-way RILs by sibling mating |
