get.ril.coinc: Calculate 3-point coincidence on an RIL chromosome

View source: R/ril_prob.R

get.ril.coincR Documentation

Calculate 3-point coincidence on an RIL chromosome

Description

Calculate (numerically) the quantity analogous to a three-point coincidence on a 2- or 4-way RIL chromosome.

Usage

get.ril.coinc(r, coinc=1, n.strains=c("2","4"), type=c("selfing","sibmating"),
         chrtype=c("A","X"), verbose=TRUE)

Arguments

r

Recombination fraction between markers.

coinc

The 3-point coincidence (used only when n.loci=3).

n.strains

Number of parental strains.

type

Method for mating.

chrtype

Indicates autosome or X chromosome (when type=sibmating only).

verbose

If TRUE, print stuff as things progress.

Value

A single number.

Author(s)

Karl W Broman, broman@wisc.edu

References

Broman, K. W. (2005) The genomes of recombinant inbred lines. Genetics 169, 1133–1146.

See Also

get.ril.prob

Examples

  get.ril.coinc(0.01)

kbroman/ricalc documentation built on May 17, 2023, 11:54 p.m.