get.start: Determine the initial state in the generation of RILs

View source: R/ril_prob.R

get.startR Documentation

Determine the initial state in the generation of RILs

Description

Determine the initial state in the Markov chain to generate 2- or 4-way recombination inbred lines.

Usage

get.start(n.strains=c("2","4"),type=c("selfing","sibmating"),
         chrtype=c("A","X"),n.loci=c("2","3"))

Arguments

n.strains

Number of parental strains.

type

Method for mating.

chrtype

Indicates autosome or X chromosome (when type=sibmating only).

n.loci

Number of loci.

Value

A character string.

Author(s)

Karl W Broman, broman@wisc.edu

References

Haldane, J. B. S. and Waddington, C. H. (1931) Inbreeding and linkage. Genetics 16, 357–374.

Broman, K. W. (2005) The genomes of recombinant inbred lines. Genetics 169, 1133–1146.

See Also

count.absorb

Examples

get.start()

kbroman/ricalc documentation built on May 17, 2023, 11:54 p.m.