count.absorb: Count absorbing states

In kbroman/ricalc: Calculations for Recombinant Inbred Lines

Count absorbing states

Description

Determine the absorbing states of the Markov chain for the generation of recombinant inbred lines.

Usage

count.absorb(n.strains=c("2","4"),type=c("selfing","sibmating"),
         chrtype=c("A","X"),n.loci=c("2","3"))

Arguments

n.strains	Number of parental strains.
type	Method for mating.
chrtype	Indicates autosome or X chromosome (when type=sibmating only).
n.loci	Number of loci.

Value

A vector whose names indicate the minimal set of absorbing states, and whose elements are the number of the full states corresponding to each.

Author(s)

Karl W Broman, [e-mail]

References

Haldane, J. B. S. and Waddington, C. H. (1931) Inbreeding and linkage. Genetics 16, 357–374.

Broman, K. W. (2005) The genomes of recombinant inbred lines. Genetics 169, 1133–1146.

Examples

  count.absorb()

kbroman/ricalc documentation built on May 17, 2023, 11:54 p.m.