mut.base: Convert nucleotide sequence to column numbers in 'exome.SIFT'

In kdkorthauer/MADGiC: Fits an empirical Bayesian hierarchical model to obtain posterior probabilities that each gene is a driver.

Description

This function converts nucleotide sequence to column numbers in the exome.SIFT object that they correspond to

Usage

  mut.base(x)

Arguments

x	a character vector containing any number of "A", "T", "G", and "C".

Value

a vector of integers where 4 corresponds to "A", 5 corresponds to "T", 6 corresponds to "G", and 7 corresponds to "C".

Note

This internal function is not intended to be called by the user.

kdkorthauer/MADGiC documentation built on June 13, 2020, 1:35 p.m.