sift.col: Retrieve the column from SIFT oject correspoinding to mutated...
In kdkorthauer/MADGiC: Fits an empirical Bayesian hierarchical model to obtain posterior probabilities that each gene is a driver.

function to match the mutated base to the appropriate column of exome.SIFT (1:4, 2:7, 3:6, 4:5)

1	sift.col(mutbase)

mutbase

an integer 1, 2, 3 or 4

see convert.seq.to.num for correspondence of base letters to numbers and mut.type.converter for details of the structure of exome.SIFT.

an integer 4, 5, 6 or 7

This internal function is not intended to be called by the user.

kdkorthauer/MADGiC documentation built on June 13, 2020, 1:35 p.m.

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