sift.colA: Retrieve the column from SIFT oject correspoinding to mutated...
In kdkorthauer/MADGiC: Fits an empirical Bayesian hierarchical model to obtain posterior probabilities that each gene is a driver.
Description
Usage
Arguments
Details
Value
Note
Description
function to match the mutated base to the appropriate
column of exome.SIFT ("A":4, "C":7, "G":6, "T":5)
Usage
1
sift.colA(mutbase)
Arguments
mutbase
a character "A", "C", "G", or "T"
Details
Similar to sift.col except uses the
character of bases instead of numerical indicator. See
mut.type.converter for details of the
structure of exome.SIFT.
Value
an integer 4, 5, 6 or 7
Note
This internal function is not intended to be called by
the user.
kdkorthauer/MADGiC documentation built on June 13, 2020, 1:35 p.m.
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Description Usage Arguments Details Value Note
Description
function to match the mutated base to the appropriate
column of exome.SIFT ("A":4, "C":7, "G":6, "T":5)
Usage
1 | sift.colA(mutbase)
|
Arguments
mutbase |
a character "A", "C", "G", or "T" |
Details
Similar to sift.col except uses the
character of bases instead of numerical indicator. See
mut.type.converter for details of the
structure of exome.SIFT.
Value
an integer 4, 5, 6 or 7
Note
This internal function is not intended to be called by the user.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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