Files in kenkellner/ubms
Bayesian Models for Data from Unmarked Animals using 'Stan'
.Rbuildignore
.covrignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/build-mac-binary.yaml
.github/workflows/build-windows-binary.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS.md
R/RcppExports.R
R/colext.R
R/distsamp.R
R/fit.R
R/fitlist.R
R/fitted.R
R/gof.R
R/inputs.R
R/kfold.R
R/loglik.R
R/mb_chisq.R
R/missing.R
R/multinomPois.R
R/occu.R
R/occuRN.R
R/occuTTD.R
R/pcount.R
R/plot_effects.R
R/plot_posteriors.R
R/posterior_linpred.R
R/posterior_predict.R
R/predict.R
R/priors.R
R/ranef.R
R/residuals.R
R/response.R
R/spatial.R
R/stanmodels.R
R/submodel.R
R/test-helpers.R
R/ubms-package.R
R/ubmsFit-methods.R
R/ubmsFitList-methods.R
R/umf.R
R/utils.R
README.md
_pkgdown.yml
configure
configure.win
cran-comments.md
inst/CITATION
inst/include/stan_meta_header.hpp
inst/stan/colext.stan
inst/stan/include/call_loglik_functions.stan
inst/stan/include/data.stan
inst/stan/include/functions_distsamp.stan
inst/stan/include/functions_keyfuns.stan
inst/stan/include/functions_multinomPois.stan
inst/stan/include/functions_occu.stan
inst/stan/include/functions_occuRN.stan
inst/stan/include/functions_occuTTD.stan
inst/stan/include/functions_pcount.stan
inst/stan/include/functions_priors.stan
inst/stan/include/license.stan
inst/stan/include/params_single_season.stan
inst/stan/include/priors_single_season.stan
inst/stan/single_season.stan
inst/stan/spatial.stan
man/RSR.Rd
man/coef-ubmsFit-method.Rd
man/extract-ubmsFit-method.Rd
man/extract_log_lik.Rd
man/fitList-ubmsFit-method.Rd
man/fitted-ubmsFit-method.Rd
man/getY-ubmsFit-method.Rd
man/get_elapsed_time-ubmsFit-method.Rd
man/get_stancode-ubmsFit-method.Rd
man/gof.Rd
man/kfold-ubmsFit-method.Rd
man/loo-ubmsFit-method.Rd
man/modSel-ubmsFitList-method.Rd
man/names-ubmsFit-method.Rd
man/names-ubmsFitList-method.Rd
man/nsamples-ubmsFit-method.Rd
man/plot-ubmsFit-ANY-method.Rd
man/plot_effects-ubmsFit-method.Rd
man/plot_posteriors-ubmsFit-method.Rd
man/plot_residuals-ubmsFit-method.Rd
man/plot_spatial.Rd
man/posterior_linpred-ubmsFit-method.Rd
man/posterior_predict-ubmsFit-method.Rd
man/predict-ubmsFit-method.Rd
man/priors.Rd
man/projected.Rd
man/ranef-ubmsFit-method.Rd
man/residuals-ubmsFit-method.Rd
man/stan_colext.Rd
man/stan_distsamp.Rd
man/stan_multinomPois.Rd
man/stan_occu.Rd
man/stan_occuRN.Rd
man/stan_occuTTD.Rd
man/stan_pcount.Rd
man/sub-ubmsFit-character-missing-missing-method.Rd
man/sub-ubmsSubmodelList-character-missing-missing-method.Rd
man/summary-ubmsFit-method.Rd
man/traceplot-ubmsFit-method.Rd
man/turnover.Rd
man/ubms.Rd
man/ubmsFitList-extractors.Rd
man/waic-ubmsFit-method.Rd
pkgdown/extra.css
src/Makevars
src/Makevars.win
src/exp_counts_occu.cpp
src/loglik.cpp
src/simz.cpp
tests/testthat.R
tests/testthat/test_colext.R
tests/testthat/test_distsamp.R
tests/testthat/test_fit.R
tests/testthat/test_fitlist.R
tests/testthat/test_inputs.R
tests/testthat/test_linpred.R
tests/testthat/test_missing.R
tests/testthat/test_multinomPois.R
tests/testthat/test_occu.R
tests/testthat/test_occuRN.R
tests/testthat/test_occuTTD.R
tests/testthat/test_pcount.R
tests/testthat/test_plot_effects.R
tests/testthat/test_plot_posteriors.R
tests/testthat/test_priors.R
tests/testthat/test_ranef.R
tests/testthat/test_residuals.R
tests/testthat/test_response.R
tests/testthat/test_spatial.R
tests/testthat/test_submodel.R
tests/testthat/test_ubmsFit_methods.R
tests/testthat/test_umf.R
tests/testthat/test_utils.R
vignettes/JAGS-comparison.Rmd
vignettes/JAGS-comparison.Rmd.orig
vignettes/fixed_plot-1.png
vignettes/random-effects.Rmd
vignettes/random-effects.Rmd.orig
vignettes/random_plot-1.png
vignettes/references.bib
vignettes/spatial-models.Rmd
vignettes/spatial-models.Rmd.orig
vignettes/spatial_cov-1.png
vignettes/spatial_eta-1.png
vignettes/spatial_marginal-1.png
vignettes/spatial_psi-1.png
vignettes/spatial_stocc-1.png
vignettes/spatial_threshold1-1.png
vignettes/spatial_threshold10-1.png
vignettes/ubms.Rmd
