RME_methyl: Compute proximity with closest tissue and non-tissue RoadMap...
In kevinVervier/TiSAn:
Description
Usage
Arguments
Value
Examples
Description
RME_methyl
Usage
1
RME_methyl(chr, position, verbose = T)
Arguments
chr
the chromosome number
position
the locus position
Value
RME.bool: boolean value equal to TRUE if the position is inside a RME methylated region
RME.prox: proximity value to the closest RME methylated region
RME.tissue: mean methylation value across all tissues of interest (only if belongs to a methylated region)
RME.others: mean methylation value across all other tissues (only if belongs to a methylated region)
Examples
1
2
#get tissue-specific methylation related features for locus chr1:5000000
RME_methyl(chr=1,position=5000000)
kevinVervier/TiSAn documentation built on May 20, 2019, 9:07 a.m.
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Description Usage Arguments Value Examples
Description
RME_methyl
Usage
1 | RME_methyl(chr, position, verbose = T)
|
Arguments
chr |
the chromosome number |
position |
the locus position |
Value
RME.bool: boolean value equal to TRUE if the position is inside a RME methylated region
RME.prox: proximity value to the closest RME methylated region
RME.tissue: mean methylation value across all tissues of interest (only if belongs to a methylated region)
RME.others: mean methylation value across all other tissues (only if belongs to a methylated region)
Examples
1 2 | #get tissue-specific methylation related features for locus chr1:5000000
RME_methyl(chr=1,position=5000000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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