getClosestGene: Compute proximity with closest tissue and non-tissue genes
In kevinVervier/TiSAn:
Description
Usage
Arguments
Value
Examples
Description
getClosestGene
Usage
1
getClosestGene(chr, position)
Arguments
chr
the chromosome number
position
the locus position
Value
tissue.gene.bool: boolean value equal to TRUE if the position is inside a known tissue gene
tissue.gene.prox: proximity value to the closest tissue gene
bgd.gene.bool: boolean value equal to TRUE if the position is inside a non-tissue gene
bgd.gene.prox: proximity value to the closest non-tissue gene
Examples
1
2
#get genes related features for locus chr1:5000000
getClosestGene(chr=1,position=5000000)
kevinVervier/TiSAn documentation built on May 20, 2019, 9:07 a.m.
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Description Usage Arguments Value Examples
Description
getClosestGene
Usage
1 | getClosestGene(chr, position)
|
Arguments
chr |
the chromosome number |
position |
the locus position |
Value
tissue.gene.bool: boolean value equal to TRUE if the position is inside a known tissue gene
tissue.gene.prox: proximity value to the closest tissue gene
bgd.gene.bool: boolean value equal to TRUE if the position is inside a non-tissue gene
bgd.gene.prox: proximity value to the closest non-tissue gene
Examples
1 2 | #get genes related features for locus chr1:5000000
getClosestGene(chr=1,position=5000000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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