get_ngrams_count: Compute the frequency for each 1,2,3,4-nucleotide in a...
In kevinVervier/TiSAn:
Description
Usage
Arguments
Value
Examples
Description
ngrams
Usage
1
get_ngrams_count(chr = "chr1", position = 5e+06)
Arguments
chr
the chromosome number (including 'chr' prefix)
position
the locus position, center of 1kbp window
Value
a named vector of length 340 (4 + 16 + 64 + 256) with ngram frequencies
Examples
1
2
#get ngrams count in chr1-4999500:5000500 interval
get_ngrams_count(chr=1,position=5000000)
kevinVervier/TiSAn documentation built on May 20, 2019, 9:07 a.m.
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Description Usage Arguments Value Examples
Description
ngrams
Usage
1 | get_ngrams_count(chr = "chr1", position = 5e+06)
|
Arguments
chr |
the chromosome number (including 'chr' prefix) |
position |
the locus position, center of 1kbp window |
Value
a named vector of length 340 (4 + 16 + 64 + 256) with ngram frequencies
Examples
1 2 | #get ngrams count in chr1-4999500:5000500 interval
get_ngrams_count(chr=1,position=5000000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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