API for kevinmhadi/khtools
Making Mskilab Life Easier

Global functions
%=%	Man page
%K%	Man page
%Q%	Man page
%Q%.CompressedGRangesList	Man page
%Q%.GRanges	Man page
%Q%.GRangesList	Man page
%inn%	Man page
%nin%	Man page
.filter_sv	Man page
.gc	Man page Source code
AND	Man page Source code
DIM	Man page Source code
DIM2	Man page Source code
NCOL2	Man page Source code
OR	Man page Source code
`%=%`	Source code
`%K%`	Source code
`colnames2<-`	Source code
`names2<-`	Source code
`rownames2<-`	Source code
aggregate_roc	Man page Source code
alt_in_cis	Man page
appendEnv	Man page
asdf	Man page
asdt	Man page
asm	Man page
asn2	Man page
ave3	Man page
aved	Man page
bcfindex	Man page
bedpe2grl	Man page
behomology	Man page
binom.conf	Man page
bool	Man page Source code
bp2grl	Man page
cenv	Man page
check_lst	Man page Source code
classystat	Man page Source code
clobber	Man page Source code
coalesce	Man page
col2rn	Man page
colexists	Man page Source code
colnames2	Man page Source code
colnames2<-	Man page
column_to_rownames	Man page Source code
complete.cases2	Man page Source code
conform_si	Man page
copy	Man page
copy2	Man page Source code
copy3	Man page
copydt	Man page Source code
copyr6	Man page Source code
copys4	Man page Source code
dcast.count	Man page
dcast.count2	Man page
dcast.wrap	Man page
debug.s4	Man page Source code
dedup	Man page Source code
dedup.cols	Man page
df2gr	Man page
df2grl	Man page
dg	Man page
dig_dir	Man page
dig_dir2	Man page
dig_job	Man page Source code
diginjob	Man page Source code
digjob	Man page
dir2	Man page Source code
dirfind	Man page Source code
do.assign	Man page Source code
do.cols	Man page Source code
do.pp	Man page Source code
dodo.call2	Man page
dt_any2lg	Man page
dt_empty2na	Man page
dt_f2char	Man page
dt_lg2int	Man page
dt_na2empty	Man page
dt_na2false	Man page
dt_na2true	Man page
dt_na2zero	Man page
dt_setallna	Man page
dt_setchar	Man page
dt_setint	Man page
dt_setnull	Man page
dtapply	Man page
dunlist2	Man page
duped	Man page Source code
dynget	Man page
eNROW	Man page Source code
empty2na	Man page Source code
enframe	Man page Source code
enframe_list	Man page Source code
error	Source code Source code Source code Source code Source code Source code Source code Source code Source code
errr	Man page
est_snv_cn	Man page
est_snv_cn_stub	Man page
et	Man page Source code
extract_ggplot	Man page
ez_string	Man page
f2int	Man page Source code
false2na	Man page Source code
feature_importance	Man page Source code
file.exists2	Man page Source code
file.info2	Man page
file.mat.exists	Man page
file.not.exists	Man page Source code
fillby	Man page Source code
find_dups	Man page Source code
findov	Man page
fit.cnv.sig	Man page
fit_classifier	Man page Source code
fitcvglmnet	Man page Source code
fitglmnet	Man page Source code
fitrandomforest	Man page Source code
fitzscore	Man page Source code
fix.cols	Man page Source code
flag2int	Man page Source code
force2	Man page
forceall	Man page
forcefun	Man page
forceload	Man page
frac	Man page Source code
fun.aggregate	Source code
g	Man page
g2	Man page
gaps	Man page
gaps,GRangesList-method	Man page
gbar.error	Man page
gd	Man page
get_accuracy	Man page Source code
get_pred	Man page Source code
getbp	Man page
getcache	Man page Source code
getdat	Man page
getdat2	Man page
gg.hist	Man page
gg.sline	Man page
gg_mytheme	Man page
ggmroc	Man page
glm.nb2	Man page Source code
glmnet_aic	Man page Source code
globasn	Man page Source code
good.file	Man page
gr.disjoin	Man page
gr.fixseq	Man page
gr.flipstrand	Man page
gr.genome	Man page
gr.noval	Man page
gr.order	Man page
gr.patch	Man page
gr.resize	Man page
gr.round	Man page
gr.setdiff2	Man page
gr.sort	Man page
gr.splgaps	Man page
gr.split	Man page
gr.sprange	Man page
gr.spreduce	Man page
gr.strand	Man page
gr.sub2	Man page
gr.within	Man page
gr2bed	Man page
gr2df	Man page
gr_calc_cov	Man page
gr_construct_by	Man page
gr_deconstruct_by	Man page
grab.hrdetect.features	Man page
grabcov	Man page
grabggtrack	Man page
grabhjab	Man page
grep_col_sort	Man page
grep_order	Man page
grg_sub	Man page
grl.disjoin	Man page
grl.flip	Man page
grl.flipstrand	Man page
grl.undf	Man page
grl2bedpe	Man page
grok_vcf	Man page
gt.each	Man page
gt.fix	Man page
gw_edges	Man page
gx	Man page
iderr	Man page Source code
idj	Man page Source code
integer_breaks	Man page
interaction2	Man page Source code
interbp_dist	Man page
intercalate	Man page Source code
intercalate_lst	Man page Source code
is.empty	Man page Source code
isNA	Man page Source code
isv2grl	Man page
ix_sdiff	Man page Source code
jitter2	Man page Source code
kcpdf	Man page Source code
kpdf	Man page Source code
kpng	Man page Source code
ksvg	Man page Source code
lapply_dt	Man page Source code
lbl.gg	Man page
len	Man page
lens	Man page
levelsinuse	Man page Source code
lg2f	Man page Source code
log10p	Man page Source code
loop_grep	Man page
loop_grepl	Man page
lst.empty	Man page Source code
lst.empty2na	Man page Source code
lst.empty2null	Man page Source code
lst.empty2replace	Man page
lst.empty2zero	Man page Source code
lst.emptychar2na	Man page Source code
lst.emptychar2null	Man page Source code
lst.emptyreplace	Man page Source code
lst.null2na	Man page Source code
lst.zerochar2empty	Man page Source code
main	Man page
make_chunks	Man page Source code
make_dummy	Man page Source code
make_roc	Man page Source code
make_roc2	Man page Source code
make_ttsplit	Man page Source code
make_xfold	Man page Source code
match	Man page
match2	Man page Source code
match3	Man page Source code
match_s	Man page Source code
matrify	Man page Source code
matrify2	Man page Source code
max.col.narm	Man page Source code
merge.repl	Man page
metanames	Man page Source code
min.col.narm	Man page Source code
mkst	Man page Source code
mrocdat	Man page Source code
mroclab	Man page Source code
mrocpred	Man page Source code
mstrsplit	Man page
mylambdas	Man page Source code
na.seql	Man page
na2empty	Man page Source code
na2false	Man page Source code
na2true	Man page Source code
na2zero	Man page Source code
names2	Man page Source code
names2<-	Man page
nan2zero	Man page Source code
ne	Man page
ne.na	Man page Source code
nodim	Man page Source code
nonacol	Man page Source code
nonzero2na	Man page Source code
normpath	Man page Source code
normv	Man page
normv_sep	Man page
nott	Man page Source code
numeq	Man page Source code
off_diag	Man page Source code
one_vs_other	Man page Source code
output_cols	Man page Source code
overwriteR6	Man page Source code
overwritefun	Man page
pairs.collect.junctions	Man page
pairs.grab.hrdetect.features	Man page
pairs.grab.ot.features	Man page
parasn	Man page Source code
parse.gr2	Man page
parse.grl2	Man page
parse_slurm_time	Man page Source code
parsesnpeff	Man page
patch_hetdels	Source code
peepr6	Man page Source code
pg_mytheme	Man page
pinch	Man page
pinch.frac	Man page
ppdf	Man page
ppng	Man page
predict.pp	Man page Source code
printerr	Man page Source code
process_alterations	Source code
process_hetdels	Source code
process_tbl	Man page Source code
qmat	Man page Source code
qq	Man page Source code
qtrim	Man page Source code
ra.dedup6	Man page
ra.overlaps6	Man page
rand.string	Man page Source code
read.bam.header	Man page
read.header	Man page Source code
read_bed	Man page
read_vcf2	Man page
readin	Man page Source code
readinfasta	Man page
reassign	Man page Source code
refactor	Man page Source code
rematch	Man page
rep_each	Man page Source code
rep_len	Man page Source code
rep_len2	Man page Source code
replace2	Man page
replace_na	Man page
reset.job	Man page Source code
ret_err	Man page Source code
ret_na_err	Man page Source code
ret_no_err	Man page
rg_sub	Man page
rintersect	Man page Source code
rleseq	Man page
rm_mparen	Man page Source code Source code
rmcol	Man page Source code
rn2col	Man page
robust.scale	Man page Source code
row.sort	Man page Source code
rownames2	Man page Source code
rownames2<-	Man page
rownames_to_column	Man page Source code
rows.all	Man page Source code
rows.any	Man page Source code
rrrepeated	Man page
runion	Man page Source code
sampler	Man page Source code
save.r	Man page Source code
score_glmnet	Source code
score_randomforest	Source code
seevar	Man page Source code
select.matrix	Man page
selfname	Man page Source code
seq_along2	Man page Source code
setAllNames	Man page Source code
setColnames	Man page Source code
setNames2	Man page Source code
setRownames	Man page Source code
set_rngseed	Man page Source code
setcolnames	Man page
setcols	Man page Source code
setrownaes	Man page
setrownames	Man page
shift_down	Man page
shift_left	Man page
shift_right	Man page
shift_up	Man page
silent	Man page
sim.bx	Man page
softmax	Man page Source code
somejit	Man page Source code
split_by	Man page Source code
ss	Man page
sstat	Man page
stack.dt	Man page Source code
stackenv	Man page
stackenv2	Man page
subgr	Man page
subset2	Man page
summ_glm	Man page Source code
sv_filter	Man page
symdiff	Man page Source code
system3	Man page
table2	Man page Source code
table3	Man page Source code
tailf	Man page
trans	Man page
trans.df	Man page
transp	Man page
try2	Man page
un	Man page Source code
unI	Man page Source code
uncut	Man page Source code
undebug.s4	Man page Source code
undup	Man page Source code
uniqf	Man page
upset2	Man page Source code
vcf_remove_sample	Man page
viewtask	Man page Source code
vmatch	Man page
w.quantile	Man page Source code
whicherr	Man page
within	Man page
within,GRanges-method	Man page
withv	Man page
withx	Man page
write.ctab	Man page
write_bed	Man page
ws2und	Man page Source code
wv	Man page
zscore	Man page