Files in kevinmhadi/khtools

Making Mskilab Life Easier

R/alt_process.R R/glmnet_utils.R R/initutils.R R/package.R README.md man/AND.Rd man/DIM.Rd man/DIM2.Rd man/NCOL2.Rd man/OR.Rd man/aggregate_roc.Rd man/alt_in_cis.Rd man/appendEnv.Rd man/asdf.Rd man/asdt.Rd man/asm.Rd man/asn2.Rd man/ave3.Rd man/aved.Rd man/bcfindex.Rd man/bedpe2grl.Rd man/behomology.Rd man/binom.conf.Rd man/bool.Rd man/bp2grl.Rd man/cenv.Rd man/check_lst.Rd man/classystat.Rd man/clobber.Rd man/coalesce.Rd man/col2rn.Rd man/colexists.Rd man/colnames2-set.Rd man/colnames2.Rd man/column_to_rownames.Rd man/complete.cases2.Rd man/conform_si.Rd man/copy.Rd man/copy2.Rd man/copy3.Rd man/copydt.Rd man/copyr6.Rd man/copys4.Rd man/dcast.count.Rd man/dcast.count2.Rd man/dcast.wrap.Rd man/debug.s4.Rd man/dedup.Rd man/dedup.cols.Rd man/df2gr.Rd man/df2grl.Rd man/dg.Rd man/dig_dir.Rd man/dig_dir2.Rd man/dig_job.Rd man/diginjob.Rd man/digjob.Rd man/dir2.Rd man/dirfind.Rd man/do.assign.Rd man/do.cols.Rd man/do.pp.Rd man/dodo.call2.Rd man/dot-filter_sv.Rd man/dot-gc.Rd man/dt_any2lg.Rd man/dt_empty2na.Rd man/dt_f2char.Rd man/dt_lg2int.Rd man/dt_na2empty.Rd man/dt_na2false.Rd man/dt_na2true.Rd man/dt_na2zero.Rd man/dt_setallna.Rd man/dt_setchar.Rd man/dt_setint.Rd man/dt_setnull.Rd man/dtapply.Rd man/dunlist2.Rd man/duped.Rd man/dynget.Rd man/eNROW.Rd man/empty2na.Rd man/enframe.Rd man/enframe_list.Rd man/errr.Rd man/est_snv_cn.Rd man/est_snv_cn_stub.Rd man/et.Rd man/extract_ggplot.Rd man/ez_string.Rd man/f2int.Rd man/false2na.Rd man/feature_importance.Rd man/file.exists2.Rd man/file.info2.Rd man/file.mat.exists.Rd man/file.not.exists.Rd man/fillby.Rd man/find_dups.Rd man/findov.Rd man/fit.cnv.sig.Rd man/fit_classifier.Rd man/fitcvglmnet.Rd man/fitglmnet.Rd man/fitrandomforest.Rd man/fitzscore.Rd man/fix.cols.Rd man/flag2int.Rd man/force2.Rd man/forceall.Rd man/forcefun.Rd man/forceload.Rd man/frac.Rd man/g.Rd man/g2.Rd man/gbar.error.Rd man/gd.Rd man/get_accuracy.Rd man/get_pred.Rd man/getbp.Rd man/getcache.Rd man/getdat.Rd man/getdat2.Rd man/gg.hist.Rd man/gg.sline.Rd man/gg_mytheme.Rd man/ggmroc.Rd man/glm.nb2.Rd man/glmnet_aic.Rd man/globasn.Rd man/good.file.Rd man/gr.disjoin.Rd man/gr.fixseq.Rd man/gr.flipstrand.Rd man/gr.genome.Rd man/gr.noval.Rd man/gr.order.Rd man/gr.patch.Rd man/gr.resize.Rd man/gr.round.Rd man/gr.setdiff2.Rd man/gr.sort.Rd man/gr.splgaps.Rd man/gr.split.Rd man/gr.sprange.Rd man/gr.spreduce.Rd man/gr.strand.Rd man/gr.sub2.Rd man/gr.within.Rd man/gr2bed.Rd man/gr2df.Rd man/gr_calc_cov.Rd man/gr_construct_by.Rd man/gr_deconstruct_by.Rd man/gr_within.Rd man/grab.hrdetect.features.Rd man/grabcov.Rd man/grabggtrack.Rd man/grabhjab.Rd man/grapes-K-grapes.Rd man/grapes-Q-grapes-.CompressedGRangesList.Rd man/grapes-Q-grapes-.GRanges.Rd man/grapes-Q-grapes-.GRangesList.Rd man/grapes-Q-grapes.Rd man/grapes-equals-grapes.Rd man/grapes-inn-grapes.Rd man/grapes-nin-grapes.Rd man/grep_col_sort.Rd man/grep_order.Rd man/grg_sub.Rd man/grl.disjoin.Rd man/grl.flip.Rd man/grl.flipstrand.Rd man/grl.undf.Rd man/grl2bedpe.Rd man/grl_gaps.Rd man/grok_vcf.Rd man/gt.each.Rd man/gt.fix.Rd man/gw_edges.Rd man/gx.Rd man/iderr.Rd man/idj.Rd man/integer_breaks.Rd man/interaction2.Rd man/interbp_dist.Rd man/intercalate.Rd man/intercalate_lst.Rd man/is.empty.Rd man/isNA.Rd man/isv2grl.Rd man/ix_sdiff.Rd man/jitter2.Rd man/kcpdf.Rd man/kpdf.Rd man/kpng.Rd man/ksvg.Rd man/lapply_dt.Rd man/lbl.gg.Rd man/len.Rd man/lens.Rd man/levelsinuse.Rd man/lg2f.Rd man/log10p.Rd man/loop_grep.Rd man/loop_grepl.Rd man/lst.empty.Rd man/lst.empty2na.Rd man/lst.empty2null.Rd man/lst.empty2replace.Rd man/lst.empty2zero.Rd man/lst.emptychar2na.Rd man/lst.emptychar2null.Rd man/lst.null2na.Rd man/lst.zerochar2empty.Rd man/main.Rd man/make_chunks.Rd man/make_dummy.Rd man/make_roc.Rd man/make_roc2.Rd man/make_ttsplit.Rd man/make_xfold.Rd man/match.Rd man/match2.Rd man/match3.Rd man/match_s.Rd man/matrify.Rd man/matrify2.Rd man/max.col.narm.Rd man/merge.repl.Rd man/metanames.Rd man/min.col.narm.Rd man/mkst.Rd man/mrocdat.Rd man/mroclab.Rd man/mrocpred.Rd man/mstrsplit.Rd man/mylambdas.Rd man/na.seql.Rd man/na2empty.Rd man/na2false.Rd man/na2true.Rd man/na2zero.Rd man/names2-set.Rd man/names2.Rd man/nan2zero.Rd man/ne.Rd man/ne.na.Rd man/nodim.Rd man/nonacol.Rd man/nonzero2na.Rd man/normpath.Rd man/normv.Rd man/normv_sep.Rd man/nott.Rd man/numeq.Rd man/off_diag.Rd man/one_vs_other.Rd man/output_cols.Rd man/overwriteR6.Rd man/overwritefun.Rd man/pairs.collect.junctions.Rd man/pairs.grab.hrdetect.features.Rd man/pairs.grab.ot.features.Rd man/parasn.Rd man/parse.gr2.Rd man/parse.grl2.Rd man/parse_slurm_time.Rd man/parsesnpeff.Rd man/peepr6.Rd man/pg_mytheme.Rd man/pinch.Rd man/pinch.frac.Rd man/ppdf.Rd man/ppng.Rd man/predict.pp.Rd man/printerr.Rd man/process_tbl.Rd man/qmat.Rd man/qq.Rd man/qtrim.Rd man/ra.dedup6.Rd man/ra.overlaps6.Rd man/rand.string.Rd man/read.bam.header.Rd man/read.header.Rd man/read_bed.Rd man/read_vcf2.Rd man/readin.Rd man/readinfasta.Rd man/reassign.Rd man/refactor.Rd man/rematch.Rd man/rep_each.Rd man/rep_len.Rd man/rep_len2.Rd man/replace2.Rd man/replace_na.Rd man/reset.job.Rd man/ret_err.Rd man/ret_na_err.Rd man/ret_no_err.Rd man/rg_sub.Rd man/rintersect.Rd man/rleseq.Rd man/rm_mparen.Rd man/rmcol.Rd man/rn2col.Rd man/robust.scale.Rd man/row.sort.Rd man/rownames2-set.Rd man/rownames2.Rd man/rownames_to_column.Rd man/rows.all.Rd man/rows.any.Rd man/rrrepeated.Rd man/runion.Rd man/sampler.Rd man/save.r.Rd man/seevar.Rd man/select.matrix.Rd man/selfname.Rd man/seq_along2.Rd man/setAllNames.Rd man/setColnames.Rd man/setNames2.Rd man/setRownames.Rd man/set_rngseed.Rd man/setcolnames.Rd man/setcols.Rd man/setrownaes.Rd man/shift_down.Rd man/shift_left.Rd man/shift_right.Rd man/shift_up.Rd man/silent.Rd man/sim.bx.Rd man/softmax.Rd man/somejit.Rd man/split_by.Rd man/ss.Rd man/sstat.Rd man/stack.dt.Rd man/stackenv.Rd man/stackenv2.Rd man/subgr.Rd man/subset2.Rd man/summ_glm.Rd man/sv_filter.Rd man/symdiff.Rd man/system3.Rd man/table2.Rd man/table3.Rd man/tailf.Rd man/trans.Rd man/trans.df.Rd man/transp.Rd man/try2.Rd man/un.Rd man/unI.Rd man/uncut.Rd man/undebug.s4.Rd man/undup.Rd man/uniqf.Rd man/upset2.Rd man/vcf_remove_sample.Rd man/viewtask.Rd man/vmatch.Rd man/w.quantile.Rd man/whicherr.Rd man/withv.Rd man/withx.Rd man/write.ctab.Rd man/write_bed.Rd man/ws2und.Rd man/wv.Rd man/zscore.Rd