averageReplicates: Average Assays Across Replicates

In kevinrue/deeperTools: Downstream Processing of DeepTools Analyses

Description

This function takes a list of SummarizedExperiment objects. It averages the requested assay between all input objects and returns a new single SummarizedExperiment object with the averaged assay.

Usage

averageReplicates(list, assay.type = "matrix")

Arguments

list	A list of SummarizedExperiment objects.
assay.type	Name the assay to average between all samples.

Value

A SummarizedExperiment object with the averaged assay.

Examples

# Prepare example data ----

sample_names <- c("A", "B", "C")

se_list <- generateDeeptoolsExperiments(20, 10, sample_names)
se_list

# Usage ----

averageReplicates(se_list)

kevinrue/deeperTools documentation built on Feb. 28, 2020, 7:45 p.m.