R/data.score.R

In kevinzhongxu/CasOligo: A R package to search the gRNA-target-site oligo for designing the taxon-specific guide RNA used for CRISPR-Cas Selective Amplicon Sequencing (CCSAS) to assess the eukaryotic microbiome of hosts (e.g. metazoans, plant)

#' prb.score:
#'
#' Data for the database of gRNA-target-site oligos that are CRISPR-Cas9 compatible, and which is specific to target the V4 region of 18S rRNA gene amplified by primers "TAReuk454FWD1 and TAReukREV3" (Stoeck et al., 2010).
#'
#'
#' @docType data
#'
#' @usage data(prb.score)
#'
#' @format A data frame
#'
#' @keywords prb.score
#'
#' @references Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO (2013)
#' The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
#' Nucl. Acids Res. 41 (D1): D590-D596.
#' (\href{https://www.ncbi.nlm.nih.gov/pubmed/23193283}{PubMed})
#'
#' Stoeck T, Bass D, Nebel M, Christen R, Jones MD, Breiner HW, Richards TA. (2010)
#' Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
#' Mol. Ecol. 19, 21–31.
#' (\href{https://www.ncbi.nlm.nih.gov/pubmed/20331767}{PubMed})
#'
#' @examples
#' data(prb.score)

"prb.score"