R/data.silva_v119_18S_99rep_V4.R

In kevinzhongxu/CasOligo: A R package to search the gRNA-target-site oligo for designing the taxon-specific guide RNA used for CRISPR-Cas Selective Amplicon Sequencing (CCSAS) to assess the eukaryotic microbiome of hosts (e.g. metazoans, plant)

#' silva_v119_18S_99rep_V4:
#'
#' Reference database of the 18S rRNA gene at V4 region amplified by primers TAReuk454FWD1 and TAReukREV3 (Stoeck et al., 2010), which uses for the identify the gRNA-target-sequence oligos.
#'
#'
#' @docType data
#'
#' @usage data(silva_v119_18S_99rep_V4)
#'
#' @format A DNAString fasta input
#'
#' @keywords silva_v119_18S_99rep_V4
#'
#' @references Stoeck T, Bass D, Nebel M, Christen R, Jones MD, Breiner HW, Richards TA. (2010)
#' Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
#' Mol. Ecol. 19, 21–31.
#' (\href{https://www.ncbi.nlm.nih.gov/pubmed/20331767}{PubMed})
#'
#' @examples
#' data(silva_v119_18S_99rep_V4)

"silva_v119_18S_99rep_V4"