API for kharchenkolab/dropestr
Preprocessing of Droplet-Based Single-Cell RNA-Seq Data
| Global functions | |
|---|---|
| AdjustCollisions | Source code |
| AdjustErrorProb | Source code |
| AdjustGeneExpressionUniform | Source code |
| ArrangePredictions | Source code |
| ArrayDerivative | Man page Source code |
| BuildCountMatrix | Source code |
| Center | Man page Source code |
| ConcatLists | Source code |
| CorrectUmiSequenceErrors | Source code |
| CorrectUmiSequenceErrorsBayesian | Source code |
| CorrectUmiSequenceErrorsClassic | Source code |
| DeadjustGeneExpression | Source code |
| ErrorNumProb | Source code |
| ErrorProbsGivenNumOfReadsLarge | Source code |
| ErrorProbsGivenRlRs | Source code |
| ErrorsNumMle | Source code |
| EstimateCellsNumber | Man page Source code |
| EstimateCellsQuality | Source code |
| EstimateSaturation | Man page Source code |
| ExtractReadsPerUmi | Source code |
| FillAdjacentUmisData | Man page Source code |
| FillCollisionsAdjustmentInfo | Source code |
| FillDpMatrix | Source code |
| FilterHighFraction | Source code |
| FilterPredictions | Source code |
| FilterUmisInGene | Source code |
| FilterUmisInGeneClassic | Source code |
| FractionSmoothScatter | Man page Source code |
| GetAdjacentUmis | Source code |
| GetAdjacentUmisNum | Source code |
| GetChromosomeFraction | Source code |
| GetCrossmergedMask | Source code |
| GetGenesetFraction | Source code |
| GetLongestTrue | Man page Source code |
| GetMcCores | Source code |
| GetMirrorPairs | Source code |
| GetOptimalPcs | Man page Source code |
| GetPercentileQuantBorders | Source code |
| GetQualityQuantBorders | Source code |
| GetSmallerNeighboursDistributionsBySizes | Source code |
| GetUmiProbabilitiesIndex | Source code |
| GetUmisDistribution | Man page Source code |
| GetUmisList | Source code |
| Normalize | Man page Source code |
| NumberOfNucleotidePairs | Source code |
| PlotCellScores | Man page Source code |
| PlotCellsNumberHist | Man page Source code |
| PlotCellsNumberLine | Man page Source code |
| PlotCellsNumberLogLog | Man page Source code |
| PlotCellsNumberSummary | Man page Source code |
| PlotGenesPerCell | Man page Source code |
| PlotIntergenicFractionByChromosomes | Man page Source code |
| PlotReadsPerUmiByCells | Man page Source code |
| PlotSaturationEstimates | Man page Source code |
| PlotUmisDistribution | Man page Source code |
| PredictKDE | Man page Source code |
| PrepareCellsNumberPlot | Man page Source code |
| PrepareClassifierData | Source code |
| PrepareClassifierTrainingData | Source code |
| PrepareLqCellsData | Man page Source code |
| PrepareLqCellsDataPipeline | Man page Source code |
| PrepareUmiCorrectionInfo | Source code |
| Quantize | Source code |
| ReadsPerUmiDataset | Source code |
| ResolveUmiDependencies | Source code |
| Scale | Man page Source code |
| ScoreCells | Man page Source code |
| ScorePipelineCells | Man page Source code |
| ScoreQualityData | Source code |
| SubsetAdjacentUmis | Source code |
| TrainClassifier | Man page Source code |
| TrainKDE | Man page Source code |
| TrimUmis | Source code |
| ValueCounts | Source code |
| ValueCountsC | Source code |
| lq_cells_data | Man page |
| reads_per_umi_per_cell | Man page |
| saturation_srr1784312 | Man page |
