PlotCellsNumberLogLog: Plot for the estimation of minimal size of high-quality cells...

In kharchenkolab/dropestr: Preprocessing of Droplet-Based Single-Cell RNA-Seq Data

Description

Plot for the estimation of minimal size of high-quality cells in log10 scale

Usage

PlotCellsNumberLogLog(
  umi.counts,
  estimate.cells.number = FALSE,
  show.legend = TRUE,
  gg.base = NULL,
  plot.label = NULL,
  plot.border = TRUE,
  linewidth = 1,
  alpha = 1,
  logticks = TRUE
)

Arguments

umi.counts	vector with the number of UMIs per cell
estimate.cells.number	boolean Whether to calculate cell numbers via EstimateCellsNumber() (default=FALSE)
plot.border	boolean Whether to include plot border (default=TRUE)
linewidth	numeric Line width in ggplot2, via the argument 'size' in 'geom_line()' (default=1)
alpha	numeric Value of the alpha parameter of the plot (default=1.0)
logticks	boolean Whether to include log plot tick marks (default=TRUE)

Value

Plot of ggplot type

kharchenkolab/dropestr documentation built on Sept. 18, 2020, 2:14 a.m.