PlotCellsNumberLine: Plot for the estimation of the number of high-quality cells

In kharchenkolab/dropestr: Preprocessing of Droplet-Based Single-Cell RNA-Seq Data

Description

Plot for the estimation of the number of high-quality cells

Usage

PlotCellsNumberLine(
  umi.counts,
  breaks = 100,
  title = NULL,
  estimate.cells.number = FALSE,
  show.legend = TRUE,
  gg.base = NULL,
  plot.label = NULL
)

Arguments

umi.counts	vector with the number of UMIs per cell
breaks	number of breaks in a histogram (default=100)
title	title of the plot (default=NULL)
estimate.cells.number	boolean Whether to calculate cell numbers via EstimateCellsNumber() (default=FALSE)
show.legend	boolean Whether to plot with legend (default=TRUE)
gg.base	base ggplot2 object (default=NULL). If NULL, uses ggplot2::ggplot()
plot.label	Parameter for ggplot2 'linetype' (default=NULL)

Value

Plot of ggplot type

kharchenkolab/dropestr documentation built on Sept. 18, 2020, 2:14 a.m.