Files in kharchenkolab/dropestr
Preprocessing of Droplet-Based Single-Cell RNA-Seq Data
.Rbuildignore
.gitignore
.travis.yml
CMakeLists.txt
DESCRIPTION
Meta/vignette.rds
NAMESPACE
R/RcppExports.R
R/cell_number.R
R/data.R
R/kde_classifier.R
R/low_quality_cells.R
R/quality_control.R
R/umi_classifier.R
R/umi_correction.R
R/utils.R
README.md
data/lq_cells_data.rda
data/reads_per_umi_per_cell.rda
data/saturation_srr1784312.rda
doc/low-quality-cells.R
doc/low-quality-cells.Rmd
doc/low-quality-cells.html
doc/report.R
doc/report.Rmd
doc/report.html
doc/umi-correction.R
doc/umi-correction.Rmd
doc/umi-correction.html
inst/cellLevelQuality.png
inst/include/ClassifierData.h
inst/include/dropestr.h
inst/include/umi_processing.h
man/ArrayDerivative.Rd
man/Center.Rd
man/EstimateCellsNumber.Rd
man/EstimateSaturation.Rd
man/FillAdjacentUmisData.Rd
man/FractionSmoothScatter.Rd
man/GetLongestTrue.Rd
man/GetOptimalPcs.Rd
man/GetUmisDistribution.Rd
man/Normalize.Rd
man/PlotCellScores.Rd
man/PlotCellsNumberHist.Rd
man/PlotCellsNumberLine.Rd
man/PlotCellsNumberLogLog.Rd
man/PlotCellsNumberSummary.Rd
man/PlotGenesPerCell.Rd
man/PlotIntergenicFractionByChromosomes.Rd
man/PlotReadsPerUmiByCells.Rd
man/PlotSaturationEstimates.Rd
man/PlotUmisDistribution.Rd
man/PredictKDE.Rd
man/PrepareCellsNumberPlot.Rd
man/PrepareLqCellsData.Rd
man/Scale.Rd
man/ScoreCells.Rd
man/ScorePipelineCells.Rd
man/TrainClassifier.Rd
man/TrainKDE.Rd
man/lq_cells_data.Rd
man/reads_per_umi_per_cell.Rd
man/saturation_srr1784312.Rd
src/.gitignore
src/ClassifierData.cpp
src/Makevars
src/RcppExports.cpp
src/adjacent_umis_estimation.cpp
src/classification.cpp
src/collisions_adjustment.cpp
src/rcpp_wrappers.cpp
src/utils.cpp
tests/testthat.R
tests/testthat/test_functions.R
vignettes/low-quality-cells.Rmd
vignettes/report.Rmd
vignettes/umi-correction.Rmd
