get_subclust_umap: Get a figure to display subclusterings at multiple...

In kharchenkolab/scITD: Single-Cell Interpretable Tensor Decomposition

Get a figure to display subclusterings at multiple resolutions

Description

Get a figure to display subclusterings at multiple resolutions

Usage

get_subclust_umap(container, all_ctypes, all_res, n_col = 3)

Arguments

container	environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses
all_ctypes	character A vector of the cell types to include
all_res	numeric A vector of resolutions matching the all_ctypes parameter
n_col	numeric The number of columns to organize the figure into (default=3)

Value

The project container with a cowplot figure of all UMAP plots in container$plots$subc_umap_fig and the individual umap plots in container$plots$subc_umaps

kharchenkolab/scITD documentation built on Sept. 25, 2023, 11:02 p.m.