get_sums: Calculates factor-stratified sums for each column. Adapted...

In kharchenkolab/scITD: Single-Cell Interpretable Tensor Decomposition

Calculates factor-stratified sums for each column. Adapted from pagoda2. https://github.com/kharchenkolab/pagoda2/blob/main/src/misc2.cpp

Description

Calculates factor-stratified sums for each column. Adapted from pagoda2. https://github.com/kharchenkolab/pagoda2/blob/main/src/misc2.cpp

Usage

get_sums(sY, rowSel)

Arguments

sY	sparse matrix Gene by cell matrix of counts
rowSel	factor The donor that each cell is from

Value

matrix of summed counts per gene per sample

kharchenkolab/scITD documentation built on Sept. 25, 2023, 11:02 p.m.