Files in khembach/DISCERNS
DISCovery of unannotated Exons from RNa-seq Splice junction reads
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/DISCERNS.R
R/RcppExports.R
R/exon_discovery_utils.R
R/exon_from_sj.R
R/extend_gtf.R
R/find_novel_exons.R
R/import_novel_sj_reads.R
R/junction_reads.R
R/predict_cassette_exon.R
R/prepare_annotation.R
README.md
data-raw/create_example_data.R
inst/extdata/novel_exons.txt
inst/extdata/selected.SJ.out.tab
inst/extdata/selected.bam
inst/extdata/selected.bam.bai
inst/extdata/selected.gtf
man/DISCERNS.Rd
man/create_tr_entry.Rd
man/downstream_count.Rd
man/extend_gtf.Rd
man/filter_junction_reads.Rd
man/filter_terminal_sj.Rd
man/filter_trans_splice_junctions.Rd
man/find_novel_exons.Rd
man/get_reads.Rd
man/get_second_sj.Rd
man/identify_exon_end.Rd
man/identify_exon_from_sj.Rd
man/identify_exon_start.Rd
man/import_novel_sj_reads.Rd
man/import_novel_sj_reads_parallel.Rd
man/match_sj_in_intron.Rd
man/new_internal_transcript.Rd
man/new_left_terminal_transcript.Rd
man/new_right_terminal_transcript.Rd
man/predict_cassette_exon.Rd
man/predict_jr_exon.Rd
man/predict_jrp_exon.Rd
man/prepare_annotation.Rd
man/sj_touching_exon.Rd
man/transcript_range.Rd
man/upstream_count.Rd
man/which_exon_terminal.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/junction_reads_utils.cpp
tests/testthat.R
tests/testthat/test_extend_gtf.R
tests/testthat/test_find_novel_exons.R
tests/testthat/test_import_novel_sj_reads.R
tests/testthat/test_junction_reads.R
tests/testthat/test_predict_cassette_exon.R
tests/testthat/test_prepare_annotation.R
vignettes/.gitignore
vignettes/DISCERNS.Rmd
