filter_trans_splice_junctions: Filter novel splice junctions based on overlapping genes
In khembach/DISCERNS: DISCovery of unannotated Exons from RNa-seq Splice junction reads
Description
Usage
Arguments
Value
View source: R/exon_discovery_utils.R
Description
This function filters splice junctions based on the genes that overlap with
the start and end of the splice junction, and that are crossed by the splice
junction.
Usage
1
filter_trans_splice_junctions(sg, eg, sjg)
Arguments
sg
Integer vector. Index of the genes that overlap with the SJ start.
eg
Integer vector. Index of the genes that overlap with the SJ end.
sjg
Integer vector. Index of the genes that overlap with the SJ.
Value
Logical scalar. FALSE if the start and end of the SJ overlap with
different genes.
khembach/DISCERNS documentation built on June 23, 2020, 3:35 p.m.
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Description Usage Arguments Value
View source: R/exon_discovery_utils.R
Description
This function filters splice junctions based on the genes that overlap with the start and end of the splice junction, and that are crossed by the splice junction.
Usage
1 | filter_trans_splice_junctions(sg, eg, sjg)
|
Arguments
sg |
Integer vector. Index of the genes that overlap with the SJ start. |
eg |
Integer vector. Index of the genes that overlap with the SJ end. |
sjg |
Integer vector. Index of the genes that overlap with the SJ. |
Value
Logical scalar. FALSE if the start and end of the SJ overlap with different genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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