import_novel_sj_reads: Import reads with novel splice junctions
In khembach/DISCERNS: DISCovery of unannotated Exons from RNa-seq Splice junction reads
Description
Usage
Arguments
Value
View source: R/import_novel_sj_reads.R
Description
This functions takes a BAM file and a GRanges object with unannotated splice
junctions as input and returns a GAlignments object with all reads from the
BAM file that contain any of the novel splice junctions.
Usage
1
import_novel_sj_reads(bam, sj_unann)
Arguments
bam
Character string. The path to the BAM file.
sj_unann
GRanges object with unannotated splice junctions.
Value
GAlignments object with all reads from the BAM file that contain a
novel splice junctions.
khembach/DISCERNS documentation built on June 23, 2020, 3:35 p.m.
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Description Usage Arguments Value
View source: R/import_novel_sj_reads.R
Description
This functions takes a BAM file and a GRanges object with unannotated splice junctions as input and returns a GAlignments object with all reads from the BAM file that contain any of the novel splice junctions.
Usage
1 | import_novel_sj_reads(bam, sj_unann)
|
Arguments
bam |
Character string. The path to the BAM file. |
sj_unann |
GRanges object with unannotated splice junctions. |
Value
GAlignments object with all reads from the BAM file that contain a novel splice junctions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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