get_reads: Import splice junction reads in a given genomic region

In khembach/DISCERNS: DISCovery of unannotated Exons from RNa-seq Splice junction reads

Description

This function imports all splice junction reads within a specified genomic region.

Usage

get_reads(bf, region)

Arguments

bf	BamFile object.
region	GRanges object specifying the genomic region from which to import the reads.

Value

GAlignments object with all reads from bf overlapping i.

khembach/DISCERNS documentation built on June 23, 2020, 3:35 p.m.