Man pages for kieranrcampbell/SpatialPRo
SpatialPRo: methods for spacial proteomics data
| boxplots | Boxplots the distribution for each channel |
| cellclass-methods | Classes of each cell |
| cells-methods | Cell measurement data |
| channelCorr | Correlation plot of channels within the sample |
| channelPlot | Boxplots the distributions of channels depending on their... |
| channels-methods | Channel names used in the sample |
| dextract-methods | Access a sample |
| dim-methods | Dimension of underlying matrix representation |
| extract-methods | Subset an SPData set |
| files-methods | File names |
| findBoundary | Cells on a class boundary |
| generateNeighbourfromID | Generate nearest neighbour data |
| getdir-methods | Experiment directory |
| id-methods | Get and set the sample ID |
| ids-methods | Sample IDs |
| initialize-SPExp-method | Initialize SPExp |
| length | Number of samples |
| length-SPExp-method | Number of samples |
| loadCells | Loads an Xell matlab file into the SPData format |
| loadexp-methods | Load an experiment |
| nCells-methods | Number of cells in the sample |
| nChannel-methods | Number of channels in the sample |
| neighbourChannel | Selects only particular channels to be returned as nearest... |
| neighbourclass-methods | Nearest neighbours of a certain class |
| neighbourCorr | Correlation plot of channels with neighbours |
| neighbourid-methods | Nearest neighbour IDs |
| neighbourmean-methods | Average over nearest neighbours |
| neighbours-methods | List of nearest neighbour readouts |
| raw-methods | Raw data matrix |
| show-SPData-method | Default show call |
| show-SPExp-method | Displays content of 'SPExp' object |
| size-methods | Cell sizes |
| spatialpro | Methods for spatial proteomics data |
| spdata-class | Class SPdata |
| SPE-data | SPExp object with 5 samples used in report. |
| SPExp-class | Class SPExp |
| SPExperiment | Create a new 'SPExp' object |
| SPExperimentfromDir | Load an experiment from cytobank in matlab format |
| spexp-extract-methods | Subset a 'SPExp' object. |
| spexp-single-extract-methods | Sets a single sample in a 'SPExp' object |
| splist-methods | Underlying list of SPData |
| weight-methods | Boundary weights |
| xy-methods | 2D Cell Coordinates |
