neighbourmean-methods: Average over nearest neighbours
In kieranrcampbell/SpatialPRo: SpatialPRo: methods for spacial proteomics data
Description
Usage
Arguments
Value
Description
Given the nearest neighbour measurements, average over the
nearest neighbours of each cell, with optional boundary
weights.
Usage
1
neighbourMean(object, useWeights = FALSE, normalise = TRUE)
Arguments
object
The SPData object to use
useWeights
If TRUE then the mean is weighted using the
relative boundary weights. If FALSE then the normal mean is taken
over the nearest neighbours.
normalise
If TRUE each channel is centre-scaled to mean 0
and standard deviation 1.
Value
A matrix of dimension n by p for
n cells and p nearest neighbours.
kieranrcampbell/SpatialPRo documentation built on May 20, 2019, 9:24 a.m.
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Description Usage Arguments Value
Description
Given the nearest neighbour measurements, average over the nearest neighbours of each cell, with optional boundary weights.
Usage
1 | neighbourMean(object, useWeights = FALSE, normalise = TRUE)
|
Arguments
object |
The SPData object to use |
useWeights |
If TRUE then the mean is weighted using the relative boundary weights. If FALSE then the normal mean is taken over the nearest neighbours. |
normalise |
If TRUE each channel is centre-scaled to mean 0 and standard deviation 1. |
Value
A matrix of dimension n by p for n cells and p nearest neighbours.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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