API for kintany/GTExR
Package for GTEx analysis with R scripts
| Global functions | |
|---|---|
| aggregate_counts | Man page |
| analyze_NPC_pulled_clones | Man page |
| analyze_NPC_var | Man page |
| analyze_imbalance_vs_counts | Man page |
| analyze_rin | Man page |
| analyze_sd_MAE_BAE | Man page |
| analyze_sd_by_threshold | Man page |
| analyze_sd_for_tissues | Man page |
| compare_high_vs_low_samples | Man page |
| compare_same_ind_diff_tissues | Man page |
| generatePlots | Man page |
| get_ASE_files_list | Man page |
| get_classification | Man page |
| get_counts_for_sample | Man page |
| get_counts_statistics | Man page |
| get_full_name | Man page |
| get_individuals_subset | Man page |
| get_ratio_sd | Man page |
| get_ratios_sample | Man page |
| get_rin_correlations_for_tissues | Man page |
| get_samples_tissues | Man page |
| get_sd_ratios | Man page |
| get_short_name | Man page |
| get_tissue_code | Man page |
| list_of_samples_with_ratios | Man page |
| load_Gtex_data | Man page |
| load_counts | Man page |
| make_plot_for_NPC | Man page |
| measure | Man page |
| plot_CV2_vs_mean | Man page |
| plot_density_ratio_per_individual | Man page |
| plot_density_ratio_per_individual_all_tissues | Man page |
| plot_one | Man page |
| plot_two | Man page |
| process_to_counts | Man page |
| read_counts | Man page |
| read_counts_and_calc_ratios | Man page |
| read_counts_and_merge_samples | Man page |
| read_ratios | Man page |
| save_Gtex_data_by_tissue | Man page |
| save_counts | Man page |
| save_counts_tissues_of_interest | Man page |
| save_ratios | Man page |
| save_ratios_tissues_of_interest | Man page |
| simulate_ratios | Man page |
| subsetGtexData | Man page |
| subset_and_get_ratio | Man page |
| variation_analysis_for_subset | Man page |
| zscores_heatmap | Man page |
