API for kintany/GTExR
Package for GTEx analysis with R scripts

Global functions
aggregate_counts Man page Source code
analyze_NPC_pulled_clones Man page Source code
analyze_NPC_var Man page Source code
analyze_imbalance_vs_counts Man page Source code
analyze_rin Man page Source code
analyze_sd_MAE_BAE Man page Source code
analyze_sd_by_threshold Man page Source code
analyze_sd_for_tissues Man page Source code
compare_high_vs_low_samples Man page Source code
compare_same_ind_diff_tissues Man page Source code
generatePlots Man page Source code
get_ASE_files_list Man page Source code
get_classification Man page Source code
get_counts_for_sample Man page Source code
get_counts_statistics Man page Source code
get_dataNorm_from_matrix Source code
get_full_name Man page Source code
get_individuals_subset Man page Source code
get_ratio_sd Man page Source code
get_ratios_sample Man page Source code
get_rin_correlations_for_tissues Man page Source code
get_samples_tissues Man page Source code
get_sd_ratios Man page Source code
get_short_name Man page Source code
get_tissue_code Man page Source code
list_of_samples_with_ratios Man page Source code
load_Gtex_data Man page Source code
load_counts Man page Source code
make_plot_for_NPC Man page Source code
measure Man page Source code
plot_CV2_vs_mean Man page Source code
plot_dataNorm Source code
plot_density_ratio_per_individual Man page Source code
plot_density_ratio_per_individual_all_tissues Man page Source code
plot_one Man page Source code
plot_two Man page Source code
process_to_counts Man page Source code
read_counts Man page Source code
read_counts_and_calc_ratios Man page Source code
read_counts_and_merge_samples Man page Source code
read_ratios Man page Source code
save_Gtex_data_by_tissue Man page Source code
save_counts Man page Source code
save_counts_tissues_of_interest Man page Source code
save_ratios Man page Source code
save_ratios_tissues_of_interest Man page Source code
select4 Source code
select5 Source code
selectPairs Source code
selectTrios Source code
simulate_ratios Man page Source code
subsetGtexData Man page Source code
subset_and_get_ratio Man page Source code
variation_analysis_for_subset Man page Source code
zscores_heatmap Man page Source code
kintany/GTExR documentation built on July 21, 2018, 7:48 p.m.