get_counts_statistics: Calculates mean, sd, CV, CV2 for each gene

Description Usage Arguments Value

Description

Calculates mean, sd, CV, CV2 for each gene

Usage

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get_counts_statistics(sv, min_counts_per_gene = 10, keepCounts = FALSE,
  mode = "norm_counts")

Arguments

sv

ExpressionSet for a given tissue

min_counts_per_gene

Minimum number of counts per gene to be considered

keepCounts

Keep columns with counts in the output

mode

"norm_counts" / "log" meaning using normalized by library size counts or using log(normalized_counts)

Value

dataframe with counts statistics


kintany/GTExR documentation built on May 14, 2019, 7:36 a.m.