get_counts_statistics: Calculates mean, sd, CV, CV2 for each gene
In kintany/GTExR: Package for GTEx analysis with R scripts
Description
Usage
Arguments
Value
Description
Calculates mean, sd, CV, CV2 for each gene
Usage
1
2
get_counts_statistics(sv, min_counts_per_gene = 10, keepCounts = FALSE,
mode = "norm_counts")
Arguments
sv
ExpressionSet for a given tissue
min_counts_per_gene
Minimum number of counts per gene to be considered
keepCounts
Keep columns with counts in the output
mode
"norm_counts" / "log" meaning using normalized by library size counts or using log(normalized_counts)
Value
dataframe with counts statistics
kintany/GTExR documentation built on May 14, 2019, 7:36 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Calculates mean, sd, CV, CV2 for each gene
Usage
1 2 | get_counts_statistics(sv, min_counts_per_gene = 10, keepCounts = FALSE,
mode = "norm_counts")
|
Arguments
sv |
ExpressionSet for a given tissue |
min_counts_per_gene |
Minimum number of counts per gene to be considered |
keepCounts |
Keep columns with counts in the output |
mode |
"norm_counts" / "log" meaning using normalized by library size counts or using log(normalized_counts) |
Value
dataframe with counts statistics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.