Files in kintany/GTExR
Package for GTEx analysis with R scripts
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
GTExR.Rproj
NAMESPACE
R/.DS_Store
R/analysis_per_tissue.R
R/analyze_NPCs.R
R/getAI_Data.R
R/get_tissue_counts.R
R/loadGtexData.R
R/plotCV2_vs_mean.R
R/runForTissue.R
R/utils.R
README.md
man/.DS_Store
man/aggregate_counts.Rd
man/analyze_NPC_pulled_clones.Rd
man/analyze_NPC_var.Rd
man/analyze_imbalance_vs_counts.Rd
man/analyze_rin.Rd
man/analyze_sd_MAE_BAE.Rd
man/analyze_sd_by_threshold.Rd
man/analyze_sd_for_tissues.Rd
man/compare_high_vs_low_samples.Rd
man/compare_same_ind_diff_tissues.Rd
man/generatePlots.Rd
man/get_ASE_files_list.Rd
man/get_classification.Rd
man/get_counts_for_sample.Rd
man/get_counts_statistics.Rd
man/get_full_name.Rd
man/get_individuals_subset.Rd
man/get_ratio_sd.Rd
man/get_ratios_sample.Rd
man/get_rin_correlations_for_tissues.Rd
man/get_samples_tissues.Rd
man/get_sd_ratios.Rd
man/get_short_name.Rd
man/get_tissue_code.Rd
man/list_of_samples_with_ratios.Rd
man/load_Gtex_data.Rd
man/load_counts.Rd
man/make_plot_for_NPC.Rd
man/measure.Rd
man/plot_CV2_vs_mean.Rd
man/plot_density_ratio_per_individual.Rd
man/plot_density_ratio_per_individual_all_tissues.Rd
man/plot_one.Rd
man/plot_two.Rd
man/process_to_counts.Rd
man/read_counts.Rd
man/read_counts_and_calc_ratios.Rd
man/read_counts_and_merge_samples.Rd
man/read_ratios.Rd
man/save_Gtex_data_by_tissue.Rd
man/save_counts.Rd
man/save_counts_tissues_of_interest.Rd
man/save_ratios.Rd
man/save_ratios_tissues_of_interest.Rd
man/simulate_ratios.Rd
man/subsetGtexData.Rd
man/subset_and_get_ratio.Rd
man/variation_analysis_for_subset.Rd
man/zscores_heatmap.Rd
