MmapprData-class: MmapprData Class
In kjohnsen/MMAPPR2: Mutation Mapping Analysis Pipeline for Pooled RNA-Seq

Stores data from each step of the MMAPPR2 pipeline.

param: MmapprParam object storing parameters used in analysis.
distance: List containing raw counts and Euclidean distance data for each chromosome. After calculateDistance, chromosomes with sufficient data should have $wtCounts, $mutCounts, and $distanceDf populated. After loessFit, the $distanceDf element for each chromosome list is replaced with a $loess element.
peaks: List of chromosomes containing peak regions. Initialized after prePeak and populated with density function after peakRefinement.
candidates: List containing GRanges object for each peak, resulting from generateCandidates function. VEP data, including gene symbol and consequence for each variant, are included in metacolumns.