MmapprData-getters: MmapprData Getters

Description Usage Arguments Value See Also Examples

Description

Access slots of MmapprData object.

Usage

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## S4 method for signature 'MmapprData'
param(obj)

## S4 method for signature 'MmapprData'
distance(obj)

## S4 method for signature 'MmapprData'
peaks(obj)

## S4 method for signature 'MmapprData'
candidates(obj)

Arguments

obj

Desired MmapprData object.

Value

Desired attribute.

See Also

MmapprData

Examples

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if (requireNamespace('MMAPPR2data', quietly=TRUE)
        & all(Sys.which(c("samtools", "vep")) != "")) {
    mmappr_param <- MmapprParam(refFasta = MMAPPR2data::goldenFasta(),
                               wtFiles = MMAPPR2data::exampleWTbam(),
                               mutFiles = MMAPPR2data::exampleMutBam(),
                               species = "danio_rerio",
                               outputFolder = tempOutputFolder())

    md <- new('MmapprData', param = mmappr_param)

    param(md)
    distance(md)
    peaks(md)
    candidates(md)
}

kjohnsen/MMAPPR2 documentation built on Oct. 1, 2019, 7:01 p.m.