Files in kkang7/CDSeq_R_Package
A Complete Deconvolution Method using Sequencing Data

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CDSeq.Rproj

CRAN-RELEASE

DESCRIPTION

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R/CDSeq-package.R R/CDSeq.R R/Cell2RNA.R R/RNA2Cell.R R/RcppExports.R R/cdseq_result1-data.R R/cdseq_result2-data.R R/cdseq_result3-data.R R/cdseq_result_pbmcmix-data.R R/cellTypeAssignSCRNA.R R/cellTypeProp-data.R R/cellTypeRNAProp-data.R R/data.R R/gene2rpkm.R R/geneLength-data.R R/intersection.R R/logpost.R R/max_rep.R R/mixtureGEP-data.R R/pbmc_CDSeq_estprop-data.R R/pbmc_ggplot-data.R R/pbmc_mix-data.R R/pbmc_true_prop-data.R R/read2gene.R R/refGEP-data.R R/sc_annotation-data.R R/sc_gep-data.R R/trueGEPgene-data.R R/trueGEPread-data.R R/trueGEPrpkm-data.R README.Rmd README.md

_pkgdown.yml

cran-comments.md

data/.DS_Store

data/SyntheticMixtureData.RData

docs/404.html

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docs/reference/Cell2RNA.html

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docs/reference/Rplot001.png

docs/reference/SyntheticMixtureData.html

docs/reference/cdseq.result.html

docs/reference/cellTypeAssign.html

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docs/reference/cellTypeAssignSCRNA.html

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docs/reference/gene2rpkm.html

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docs/reference/hungarian_Rcpp.html

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docs/reference/merge_df.html

docs/reference/mixtureGEP.html

docs/reference/pbmc_ggplot.html

docs/reference/pbmc_mix.html

docs/reference/read2gene.html

docs/reference/refGEP.html

docs/reference/result1.html

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docs/reference/sc_annotation.html

docs/reference/sc_gep.html

docs/reference/seedMT.html

docs/reference/true_GEP_gene.html

docs/reference/true_GEP_read.html

docs/reference/true_GEP_rpkm.html

docs/reference/true_prop.html

docs/reference/true_prop_RNA.html

docs/reference/true_prop_cell.html

inst/CITATION

man/CDSeq-R-package.Rd man/CDSeq.Rd man/Cell2RNA.Rd man/RNA2Cell.Rd man/SyntheticMixtureData.Rd man/cdseq.result.Rd man/cellTypeAssignSCRNA.Rd

man/figures/README-fig1-1.png

man/figures/README-fig2-1.png

man/figures/README-fig3-1.png

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man/figures/README-fig5-1.png

man/gene2rpkm.Rd man/gene_length.Rd man/gibbsSampler.Rd man/hungarian_Rcpp.Rd man/intersection.Rd man/logpost.Rd man/max_rep.Rd man/merge_df.Rd man/mixtureGEP.Rd man/pbmc_ggplot.Rd man/pbmc_mix.Rd man/read2gene.Rd man/refGEP.Rd man/result1.Rd man/result2.Rd man/result3.Rd man/sc_annotation.Rd man/sc_gep.Rd man/seedMT.Rd man/true_GEP_gene.Rd man/true_GEP_read.Rd man/true_GEP_rpkm.Rd man/true_prop.Rd man/true_prop_RNA.Rd man/true_prop_cell.Rd

src/CDSeq.so

src/CDSeq_types.h

src/GibbsSampler.cpp

src/GibbsSampler.o

src/Hungarian.cpp

src/Hungarian.h

src/Hungarian.o

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/RcppExports.o

src/cokus.cpp

src/cokus.h

src/cokus.o

src/hungarian_Rcpp.cpp

src/hungarian_Rcpp.o

tests/testthat.R tests/testthat/test-CDSeq.R tests/testthat/test-cellTypeAssignSCRNA.R

vignettes/.gitignore

vignettes/CDSeq-vignette.Rmd

kkang7/CDSeq_R_Package documentation built on May 4, 2021, 8:12 p.m.

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kkang7/CDSeq_R_Package
A Complete Deconvolution Method using Sequencing Data

Files in kkang7/CDSeq_R_Package
A Complete Deconvolution Method using Sequencing Data

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kkang7/CDSeq_R_Package A Complete Deconvolution Method using Sequencing Data

Files in kkang7/CDSeq_R_Package A Complete Deconvolution Method using Sequencing Data

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kkang7/CDSeq_R_Package
A Complete Deconvolution Method using Sequencing Data

Files in kkang7/CDSeq_R_Package
A Complete Deconvolution Method using Sequencing Data