Files in kkdey/aRchaic
Exploration, Visualization and Clustering of DNA damage patterns

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/archaic_fit.R R/archaic_plot.R R/archaic_pool.R R/archaic_prepare.R R/archaic_view.R R/data.R R/decompose_theta.R R/filter_signatures_only_location.R README.md
aRchaic.Rproj
bin/README.md
bin/example.bam
bin/generate_summary_bams.py
data/base_probs_moderns.rda
docs/404.html
docs/LICENSE-text.html
docs/articles/archaic.html
docs/articles/archaic_files/figure-html/unnamed-chunk-10-1.png
docs/articles/archaic_files/figure-html/unnamed-chunk-8-1.png
docs/articles/fig.001.png
docs/articles/index.html
docs/articles/index_files/figure-html/unnamed-chunk-8-1.png
docs/articles/logo_design.svg
docs/articles/vignette_fig.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/archaic_fit.html
docs/reference/archaic_plot.html
docs/reference/archaic_pool.html
docs/reference/archaic_prepare.html
docs/reference/archaic_view.html
docs/reference/base_probs_moderns.html
docs/reference/decompose_theta.html
docs/reference/filter_signatures_only_location.html
docs/reference/index.html
inst/.DS_Store
inst/extdata/ancients/.rda
inst/extdata/ancients/NE2_subsampled.csv
inst/extdata/ancients/NE3_subsampled.csv
inst/extdata/ancients/NE4_subsampled.csv
inst/extdata/ancients/NE5_subsampled.csv
inst/extdata/ancients/NE6_subsampled.csv
inst/extdata/moderns/.rda
inst/extdata/moderns/NA19788_subsampled.csv
inst/extdata/moderns/NA19789_subsampled.csv
inst/extdata/moderns/NA19792_subsampled.csv
inst/extdata/moderns/NA19794_subsampled.csv
inst/extdata/moderns/NA19795_subsampled.csv
inst/images/vignette_fig.key
man/archaic_fit.Rd man/archaic_plot.Rd man/archaic_pool.Rd man/archaic_prepare.Rd man/archaic_view.Rd man/base_probs_moderns.Rd man/decompose_theta.Rd man/filter_signatures_only_location.Rd vignettes/archaic.Rmd
vignettes/fig.001.png
vignettes/logo_design.svg
vignettes/vignette_fig.png
kkdey/aRchaic documentation built on Jan. 17, 2021, 5:33 p.m.