View source: R/getListProfData.R
getFreqMutData | R Documentation |
get mutation frequency
getFreqMutData(list, GeneList)
list |
a list of data frame with mutation data. Each data frame is for one study |
GeneList |
file name of GeneList examples: "73" |
a data frame with mutation frequency. gene is in rows and study is in column
cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run:
getDataByGenes( api = cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)
## End(Not run)
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