getFreqMutData: get mutation frequency

In kmezhoud/canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

get mutation frequency

Description

get mutation frequency

Usage

getFreqMutData(list, GeneList)

Arguments

list	a list of data frame with mutation data. Each data frame is for one study
GeneList	file name of GeneList examples: "73"

Value

a data frame with mutation frequency. gene is in rows and study is in column

Examples

cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run: 
getDataByGenes( api =  cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)

## End(Not run)

kmezhoud/canceR documentation built on March 4, 2024, 12:34 a.m.