getGenProfs: Get Genetic Profile from selected Studies
In kmezhoud/canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
getGenProfs R Documentation
Get Genetic Profile from selected Studies
Description
Get Genetic Profile from selected Studies
Usage
getGenProfs()
Value
dataframe with genetic profil
Examples
cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run:
getDataByGenes( api = cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)
## End(Not run)
kmezhoud/canceR documentation built on March 4, 2024, 12:34 a.m.
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| getGenProfs | R Documentation |
Get Genetic Profile from selected Studies
Description
Get Genetic Profile from selected Studies
Usage
getGenProfs()
Value
dataframe with genetic profil
Examples
cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run:
getDataByGenes( api = cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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