getCasesGenProfs: get Cases and Genetic Profiles of selected Studies.

In kmezhoud/canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

get Cases and Genetic Profiles of selected Studies.

Description

get Cases and Genetic Profiles of selected Studies.

Usage

getCasesGenProfs()

Value

This function is run by the "Get Cases and Genetic Profiles for selected Studies in starting window. This function needs to select at least one study and display Cases and genetic profiles in the main window.

Examples

cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run: 
getDataByGenes( api =  cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)

## End(Not run)

kmezhoud/canceR documentation built on March 4, 2024, 12:34 a.m.