getListProfData: Get list of data frame with profiles data (CNA,mRNA,...
In kmezhoud/canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
View source: R/getListProfData.R
getListProfData R Documentation
Get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)
Description
Get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)
Usage
getListProfData(checked_Studies, geneList)
Arguments
checked_Studies
checked studies in corresponding panel (input$StudiesIDCircos, input$StudiesIDReactome).
geneList
GeneList with Hugo Symbol
Value
A LIST of profiles data (CNA, mRNA, Methylation, Mutation, miRNA, RPPA).
Each dimension content a list of studies.
Examples
readRDS(paste(path.package("canceR"),"/extdata/rdata/brca_tcga73genes.rds", sep=""))
## Not run:
getListProfData()
head(ENV$ProfData$Expression)
## End(Not run)
kmezhoud/canceR documentation built on March 4, 2024, 12:34 a.m.
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View source: R/getListProfData.R
| getListProfData | R Documentation |
Get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)
Description
Get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)
Usage
getListProfData(checked_Studies, geneList)
Arguments
checked_Studies |
checked studies in corresponding panel (input$StudiesIDCircos, input$StudiesIDReactome). |
geneList |
GeneList with Hugo Symbol |
Value
A LIST of profiles data (CNA, mRNA, Methylation, Mutation, miRNA, RPPA). Each dimension content a list of studies.
Examples
readRDS(paste(path.package("canceR"),"/extdata/rdata/brca_tcga73genes.rds", sep=""))
## Not run:
getListProfData()
head(ENV$ProfData$Expression)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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