fc_load_config: Load Fc Analysis Config .R File

In kmorrisongr/fcan: Fc Array Analysis and Manipulation

Description

Loads the contents of the provided config file, performs data imputation, any specified filtering, binning, and prints out sessionInfo().

Usage

fc_load_config(
  config_location,
  experiment_name,
  flags,
  gopts,
  fc = NULL,
  only_group = NULL,
  bin_method = NULL,
  ref_group = NULL
)

Arguments

config_location	A string specifying the file path to the config.R file, relative to the location from which this function is called, or an absolute file path.
experiment_name	A string specifying the name of the current experiment. Will be used to create a separate subdirectory for results.
fc	The Fc Array data frame. NULL means that it will be loaded from the location specified in the config.R file. If an Fc Array data frame is passed, then it will be subjected to the filtering, binning, etc. that you have specified.
bin_method	If flags$do_bin is TRUE, this is the function you will use to assign new groups.
ref_group	If flags$do_differs is TRUE, this is a string specifying the group you want to define as baseline.

Value

A list containing the Fc Array data frame modified to your specifications, and the new results_dir string for this experiment, etc.

kmorrisongr/fcan documentation built on Sept. 9, 2020, 10:12 a.m.