fcff_filter_features: Filter Features

In kmorrisongr/fcan: Fc Array Analysis and Manipulation

Description

Filter features based on keyword. You can keep those, remove those, and many other things.

Usage

fcff_filter_features(
  fc,
  feats,
  action,
  behavior = "permissive",
  diff_opts = NULL
)

Arguments

fc	The Fc Array data frame.
feats	Vector of strings for the features you want to keep or remove.
action	String specifying whether you want to "keep" or "toss" the features in feats.
behavior	Whether the feature names will be matched by: containing any of the strings in feats ("permissive"). containing all of the strings in feats ("strict"). Alternatively, "differs" specifies that features will be removed by difference from baseline. This will be done instead of keyword filtering (so to do both, call this function twice).
diff_opts	list of options if behavior = "differs". see ?fcff_feats_diff.

Value

The Fc Array data frame filtered based on what you specified.

Examples

new_fc = fcff_filter_features(fc, c("gp41", "gp120"), "keep")
my_diff_opts = list() # fill with stuff
diff_fc = fccu_filter_features(fc, NULL, NULL, behavior="differs",
					diff_opts=my_diff_opts)

kmorrisongr/fcan documentation built on Sept. 9, 2020, 10:12 a.m.