fcgo_l10_pplot: Plot -log10 Transformed p-values
In kmorrisongr/fcan: Fc Array Analysis and Manipulation

Plots p-values after -log10 transforming them. This makes a plot where points higher up on the y-axis are lower p-values. Points are colored by detection reagant and shaped by antigen being detected.

fcgo_l10_pplot(
  p_vals,
  pdf_name,
  main,
  line_method,
  gopts,
  pt_colors,
  pt_shapes,
  ylim = NULL
)

`p_vals`	A vector of p-values.
`pdf_name`	The name of the output file where the plot will be saved. Should be a full file path.
`main`	The title of the plot.
`line_method`	A string indicating the method you want to use to draw the arbitrary cutoff line. "bonferroni" (for p < 0.05), "fdr" (for q < 0.2), and "raw" (just -log10(0.05)) are supported.
`gopts`	A list of graphical options. Must have specified the subparameters: gopts$ppar_mar The margins for this plot. See ?par for more info. Default is c(5.1, 4.1, 4.1, 6). gopts$reag_legend_inset The inset for the legend relative to the plot. gopts$reag_cats The categories for your detection reagants. gopts$reag_cols The colors for the detection reagant categories. gopts$ant_shapes The shapes for the antigens being detected.
`pt_colors`	Colors for each point in p_vals. These should be generated from gopts$reag_cols. See ?fcgo_get_prop for an example of how to generate this.
`pt_shapes`	Shapes for each point in p_vals. These should be generated from gopts$ant_shapes. See ?fcgo_get_prop for an example of how to generate this.
`ylim`	An optional parameter for setting the y-limits of the plot.