TCGA_IMCell_fraction: Immune cell type fractions for TCGA data

In korkutlab/imogimap: What the Package Does (One Line, Title Case)

Immune cell type fractions for TCGA data

Description

CIBERSORT fraction of each 21 immune cell type within immune population. Note that The values are not absolute values and are normalized by the sum of all 21 types as provided by CIBERSORT.

Usage

TCGA_IMCell_fraction

Format

A data frame with 11080 rows and 23 variables:

PATIENT_BARCODE

character TCGA patient barcode

B.Cells.Memory

double fraction of Memory B Cells

B.Cells.Naive

double Naive B cells

Plasma.Cells

double Plasma cells

T.Cells.CD8

double CD8 T Cells

T.Cells.CD4.Naive

double Naive CD4 T Cells

T.Cells.CD4.Memory.Activated

double Activated Memory CD4 T cells

T.Cells.CD4.Memory.Resting

double Resting Memory CD4 T cells

T.Cells.Follicular.Helper

double Helper Follicular T Cells

T.Cells.Regulatory.Tregs

double Regulatory T cells

T.Cells.gamma.delta

double Gamma Delta T Cells

NK.Cells.Activated

double Activated NK Cells

NK.Cells.Resting

double Resting NK Cells

Monocytes

double Monocytes

Macrophages.M0

double M0 Macrophages

Macrophages.M1

double M1 Macrophages

Macrophages.M2

double M2 Macrophages

Dendritic.Cells.Resting

double Resting Dendritic Cells

Dendritic.Cells.Activated

double Activated Dendritic Cells

Mast.Cells.Activated

double Activated Mast Cells

Mast.Cells.Resting

double Resting Mast Cells

Eosinophils

double Eosinophils

Neutrophils

double Neutrophils

Source

https://cibersort.stanford.edu

korkutlab/imogimap documentation built on March 17, 2023, 8:22 a.m.